IL_5WE4_080

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCU*AUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE4_080 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2128

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5WE4|1|A|G|2102
5WE4|1|A|C|2103
5WE4|1|A|C|2104
5WE4|1|A|U|2105
*
5WE4|1|A|A|2184
5WE4|1|A|U|2185
5WE4|1|A|G|2186
5WE4|1|A|U|2187

Current chains

Chain A

23S rRNA

Nearby chains