3D structure

PDB id
5WE4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu wt complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WE4_091 not in the Motif Atlas
Homologous match to IL_5J7L_338
Geometric discrepancy: 0.1038
The information below is about IL_5J7L_338
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

5WE4|1|A|C|2466
5WE4|1|A|C|2467
5WE4|1|A|A|2468
5WE4|1|A|A|2469
5WE4|1|A|G|2470
*
5WE4|1|A|C|2480
5WE4|1|A|G|2481
5WE4|1|A|A|2482
5WE4|1|A|C|2483
5WE4|1|A|G|2484

Current chains

Chain A
23S rRNA

Nearby chains

Chain 4
50S ribosomal protein L36
Chain M
50S ribosomal protein L16

Coloring options:


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