IL_5WE4_116

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE4_116 not in the Motif Atlas

Homologous match to IL_5J7L_004

Geometric discrepancy: 0.1399

The information below is about IL_5J7L_004

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_80097.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5WE4|1|a|C|54
5WE4|1|a|A|55
5WE4|1|a|U|56
*
5WE4|1|a|A|356
5WE4|1|a|G|357

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20

Chain y

Transfer RNA; tRNA

Chain z

Elongation factor Tu 2