IL_5WE4_130

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE4_130 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1324

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5WE4|1|a|U|409
5WE4|1|a|G|410
5WE4|1|a|A|411
5WE4|1|a|A|412
5WE4|1|a|G|413
5WE4|1|a|A|414
5WE4|1|a|A|415
5WE4|1|a|G|416
*
5WE4|1|a|U|427
5WE4|1|a|G|428
5WE4|1|a|U|429
5WE4|1|a|A|430
5WE4|1|a|A|431
5WE4|1|a|A|432
5WE4|1|a|G|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4