3D structure

PDB id
5WE4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu wt complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WE4_148 not in the Motif Atlas
Homologous match to IL_5J7L_037
Geometric discrepancy: 0.0795
The information below is about IL_5J7L_037
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

5WE4|1|a|C|779
5WE4|1|a|A|780
5WE4|1|a|A|781
5WE4|1|a|A|782
5WE4|1|a|C|783
*
5WE4|1|a|G|799
5WE4|1|a|G|800
5WE4|1|a|U|801
5WE4|1|a|A|802
5WE4|1|a|G|803

Current chains

Chain a
16S rRNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain k
30S ribosomal protein S11
Chain u
30S ribosomal protein S21

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