IL_5WE6_062

3D structure

PDB id

5WE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGAGG*UGGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE6_062 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2605

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5WE6|1|A|G|1719
5WE6|1|A|U|1720
5WE6|1|A|G|1721
5WE6|1|A|A|1722
5WE6|1|A|G|1723
5WE6|1|A|G|1724
*
5WE6|1|A|U|1736
5WE6|1|A|G|1737
5WE6|1|A|G|1738
5WE6|1|A|A|1739
5WE6|1|A|G|1740
5WE6|1|A|C|1741

Current chains

Chain A

23S rRNA

Nearby chains