IL_5WE6_126

3D structure

PDB id

5WE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE6_126 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.162

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5WE6|1|a|U|409
5WE6|1|a|G|410
5WE6|1|a|A|411
5WE6|1|a|A|412
5WE6|1|a|G|413
5WE6|1|a|A|414
5WE6|1|a|A|415
5WE6|1|a|G|416
*
5WE6|1|a|U|427
5WE6|1|a|G|428
5WE6|1|a|U|429
5WE6|1|a|A|430
5WE6|1|a|A|431
5WE6|1|a|A|432
5WE6|1|a|G|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4