IL_5WF0_028

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WF0_028 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2064

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5WF0|1|A|G|875
5WF0|1|A|C|876
5WF0|1|A|A|877
5WF0|1|A|A|878
5WF0|1|A|G|879
*
5WF0|1|A|C|898
5WF0|1|A|A|899
5WF0|1|A|A|900
5WF0|1|A|C|901
5WF0|1|A|C|902

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16