IL_5WFK_029

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGG*UUACC

Length

9 nucleotides

Bulged bases

5WFK|1|A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFK_029 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3289

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5WFK|1|A|G|879
5WFK|1|A|G|880
5WFK|1|A|G|881
5WFK|1|A|G|882
*
5WFK|1|A|U|894
5WFK|1|A|U|895
5WFK|1|A|A|896
5WFK|1|A|C|897
5WFK|1|A|C|898

Current chains

Chain A

23S rRNA

Nearby chains