IL_5WFK_128

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFK_128 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1218

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5WFK|1|a|U|409
5WFK|1|a|G|410
5WFK|1|a|A|411
5WFK|1|a|A|412
5WFK|1|a|G|413
5WFK|1|a|A|414
5WFK|1|a|A|415
5WFK|1|a|G|416
*
5WFK|1|a|U|427
5WFK|1|a|G|428
5WFK|1|a|U|429
5WFK|1|a|A|430
5WFK|1|a|A|431
5WFK|1|a|A|432
5WFK|1|a|G|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4