IL_5WFK_172

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACUC*GUUAU

Length

10 nucleotides

Bulged bases

5WFK|1|A|C|846, 5WFK|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFK_172 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.1789

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

5WFK|1|A|A|844
5WFK|1|A|A|845
5WFK|1|A|C|846
5WFK|1|A|U|847
5WFK|1|A|C|848
*
5WFK|1|A|G|930
5WFK|1|A|U|931
5WFK|1|A|U|932
5WFK|1|A|A|933
5WFK|1|A|U|934

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L30