IL_5WFS_039

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

5WFS|1|A|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFS_039 not in the Motif Atlas

Geometric match to IL_4V9F_044

Geometric discrepancy: 0.2297

The information below is about IL_4V9F_044

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

5WFS|1|A|G|1087
5WFS|1|A|A|1088
5WFS|1|A|A|1089
5WFS|1|A|A|1090
*
5WFS|1|A|U|1101
5WFS|1|A|C|1102

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36 1

Chain I

50S ribosomal protein L11