IL_5WFS_090

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

C(PSU)GA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFS_090 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.3234

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

5WFS|1|A|C|2456
5WFS|1|A|PSU|2457
5WFS|1|A|G|2458
5WFS|1|A|A|2459
*
5WFS|1|A|U|2493
5WFS|1|A|G|2494
5WFS|1|A|G|2495

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16