IL_5WFS_127

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFS_127 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1797

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5WFS|1|a|U|409
5WFS|1|a|G|410
5WFS|1|a|A|411
5WFS|1|a|A|412
5WFS|1|a|G|413
5WFS|1|a|A|414
5WFS|1|a|A|415
5WFS|1|a|G|416
*
5WFS|1|a|U|427
5WFS|1|a|G|428
5WFS|1|a|U|429
5WFS|1|a|A|430
5WFS|1|a|A|431
5WFS|1|a|A|432
5WFS|1|a|G|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4