IL_5WFS_192

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGGA*UCAUUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFS_192 not in the Motif Atlas

Homologous match to IL_6CZR_131

Geometric discrepancy: 0.5017

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5WFS|1|a|G|450
5WFS|1|a|A|451
5WFS|1|a|A|452
5WFS|1|a|G|453
5WFS|1|a|G|454
5WFS|1|a|G|455
5WFS|1|a|A|456
*
5WFS|1|a|U|476
5WFS|1|a|C|477
5WFS|1|a|A|478
5WFS|1|a|U|479
5WFS|1|a|U|480
5WFS|1|a|G|481
5WFS|1|a|A|482
5WFS|1|a|C|483

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16