IL_5WIS_067
3D structure
- PDB id
- 5WIS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- UGCGAAC*GGAGGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 5WIS|1|1A|G|1832, 5WIS|1|1A|G|1847, 5WIS|1|1A|U|1851
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WIS_067 not in the Motif Atlas
- Homologous match to IL_7RQB_070
- Geometric discrepancy: 0.0381
- The information below is about IL_7RQB_070
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.3
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5WIS|1|1A|U|1829
5WIS|1|1A|G|1830
5WIS|1|1A|C|1831
5WIS|1|1A|G|1832
5WIS|1|1A|A|1833
5WIS|1|1A|A|1834
5WIS|1|1A|C|1835
*
5WIS|1|1A|G|1844
5WIS|1|1A|G|1845
5WIS|1|1A|A|1846
5WIS|1|1A|G|1847
5WIS|1|1A|G|1848
5WIS|1|1A|U|1849
5WIS|1|1A|A|1850
5WIS|1|1A|U|1851
5WIS|1|1A|A|1852
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
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