IL_5WIS_253

3D structure

PDB id

5WIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAGCC*GGCGCCGGUGAAAUAC

Length

22 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Missing nucleotides: 2124, 2125, 2126, 2127, 2128, 2129, 2159, 2160, 2161, 2162, 2163, 2164, 2165, 2166, 2167, 2168, 2169, 2170, 2171, 2172, 2173, 2174

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WIS|1|2A|G|2124
5WIS|1|2A|G|2125
5WIS|1|2A|A|2126
5WIS|1|2A|G|2127
5WIS|1|2A|C|2128
5WIS|1|2A|C|2129
*
5WIS|1|2A|G|2159
5WIS|1|2A|G|2160
5WIS|1|2A|C|2161
5WIS|1|2A|G|2162
5WIS|1|2A|C|2163
5WIS|1|2A|C|2164
5WIS|1|2A|G|2165
5WIS|1|2A|G|2166
5WIS|1|2A|U|2167
5WIS|1|2A|G|2168
5WIS|1|2A|A|2169
5WIS|1|2A|A|2170
5WIS|1|2A|A|2171
5WIS|1|2A|U|2172
5WIS|1|2A|A|2173
5WIS|1|2A|C|2174

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA