IL_5WIT_036
3D structure
- PDB id
- 5WIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAAGUG*CUUAAG
- Length
- 13 nucleotides
- Bulged bases
- 5WIT|1|1A|U|1187, 5WIT|1|1A|A|1189
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WIT_036 not in the Motif Atlas
- Geometric match to IL_7RQB_039
- Geometric discrepancy: 0.0545
- The information below is about IL_7RQB_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.3
- Basepair signature
- cWW-cSH-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 5
Unit IDs
5WIT|1|1A|C|1064
5WIT|1|1A|U|1065
5WIT|1|1A|A|1066
5WIT|1|1A|A|1067
5WIT|1|1A|G|1068
5WIT|1|1A|U|1069
5WIT|1|1A|G|1070
*
5WIT|1|1A|C|1185
5WIT|1|1A|U|1186
5WIT|1|1A|U|1187
5WIT|1|1A|A|1188
5WIT|1|1A|A|1189
5WIT|1|1A|G|1190
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1N
- 50S ribosomal protein L13
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