IL_5WIT_244

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

5WIT|1|2A|A|1938, 5WIT|1|2A|U|1944, 5WIT|1|2A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIT_244 not in the Motif Atlas

Homologous match to IL_7RQB_077

Geometric discrepancy: 0.0598

The information below is about IL_7RQB_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WIT|1|2A|C|1934
5WIT|1|2A|G|1935
5WIT|1|2A|A|1936
5WIT|1|2A|A|1937
5WIT|1|2A|A|1938
5WIT|1|2A|5MU|1939
5WIT|1|2A|U|1940
5WIT|1|2A|C|1941
5WIT|1|2A|5MC|1942
5WIT|1|2A|U|1943
5WIT|1|2A|U|1944
5WIT|1|2A|G|1945
*
5WIT|1|2A|C|1961
5WIT|1|2A|5MC|1962
5WIT|1|2A|U|1963
5WIT|1|2A|G|1964

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2w

Transfer RNA; tRNA