IL_5WIT_299

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIT_299 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1044

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5WIT|1|2a|G|409
5WIT|1|2a|G|410
5WIT|1|2a|A|411
5WIT|1|2a|A|412
5WIT|1|2a|G|413
5WIT|1|2a|A|414
5WIT|1|2a|A|415
5WIT|1|2a|G|416
*
5WIT|1|2a|U|427
5WIT|1|2a|G|428
5WIT|1|2a|U|429
5WIT|1|2a|A|430
5WIT|1|2a|A|431
5WIT|1|2a|A|432
5WIT|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4