IL_5WIT_303

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CG(PSU)GCCAG*CGGUAAUACG

Length

18 nucleotides

Bulged bases

5WIT|1|2a|A|532, 5WIT|1|2a|U|534, 5WIT|1|2a|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WIT|1|2a|C|514
5WIT|1|2a|G|515
5WIT|1|2a|PSU|516
5WIT|1|2a|G|517
5WIT|1|2a|C|518
5WIT|1|2a|C|519
5WIT|1|2a|A|520
5WIT|1|2a|G|521
*
5WIT|1|2a|C|528
5WIT|1|2a|G|529
5WIT|1|2a|G|530
5WIT|1|2a|U|531
5WIT|1|2a|A|532
5WIT|1|2a|A|533
5WIT|1|2a|U|534
5WIT|1|2a|A|535
5WIT|1|2a|C|536
5WIT|1|2a|G|537

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12

Chain 2v

mRNA

Chain 2w

Transfer RNA; tRNA