IL_5WLC_005

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCG*UC

Length

6 nucleotides

Bulged bases

5WLC|1|L0|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_005 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.3568

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

5WLC|1|L0|G|107
5WLC|1|L0|U|108
5WLC|1|L0|C|109
5WLC|1|L0|G|110
*
5WLC|1|L0|U|136
5WLC|1|L0|C|137

Current chains

Chain L0

5' ETS

Nearby chains

Chain LL

Utp5

Chain SU

Noc4