IL_5WLC_012

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_012 not in the Motif Atlas

Geometric match to IL_4V9F_068

Geometric discrepancy: 0.2813

The information below is about IL_4V9F_068

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

5WLC|1|L0|G|337
5WLC|1|L0|A|338
5WLC|1|L0|A|339
5WLC|1|L0|U|340
*
5WLC|1|L0|A|386
5WLC|1|L0|C|387

Current chains

Chain L0

5' ETS

Nearby chains

Chain LW

Utp7

Chain LZ

Imp3

Chain NE

Faf1

Chain SS

Utp14