IL_5WLC_014

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCC*GUGU

Length

7 nucleotides

Bulged bases

5WLC|1|L0|U|382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_014 not in the Motif Atlas

Geometric match to IL_5TBW_079

Geometric discrepancy: 0.1691

The information below is about IL_5TBW_079

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5WLC|1|L0|G|341
5WLC|1|L0|C|342
5WLC|1|L0|C|343
*
5WLC|1|L0|G|381
5WLC|1|L0|U|382
5WLC|1|L0|G|383
5WLC|1|L0|U|384

Current chains

Chain L0

5' ETS

Nearby chains

Chain LW

Utp7

Chain NA

Mpp10

Chain NE

Faf1

Chain SS

Utp14