IL_5WLC_024

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGA*UUUU

Length

7 nucleotides

Bulged bases

5WLC|1|L0|U|525

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_024 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.2321

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5WLC|1|L0|A|510
5WLC|1|L0|G|511
5WLC|1|L0|A|512
*
5WLC|1|L0|U|523
5WLC|1|L0|U|524
5WLC|1|L0|U|525
5WLC|1|L0|U|526

Current chains

Chain L0

5' ETS

Nearby chains

Chain LU

Sof1

Chain SA

Nop56

Chain SS

Utp14