IL_5WLC_025

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_025 not in the Motif Atlas

Geometric match to IL_5ED1_002

Geometric discrepancy: 0.1733

The information below is about IL_5ED1_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

5WLC|1|L0|C|550
5WLC|1|L0|A|551
5WLC|1|L0|G|552
*
5WLC|1|L0|C|585
5WLC|1|L0|A|586
5WLC|1|L0|G|587

Current chains

Chain L0

5' ETS

Nearby chains

Chain LP

Utp6

Chain SQ

Fcf2

Chain SS

Utp14