IL_5WLC_029

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_029 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1957

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

5WLC|1|L1|U|117
5WLC|1|L1|U|118
5WLC|1|L1|A|119
5WLC|1|L1|U|120
5WLC|1|L1|U|121
5WLC|1|L1|U|122
*
5WLC|1|L1|A|295
5WLC|1|L1|U|296
5WLC|1|L1|U|297
5WLC|1|L1|C|298
5WLC|1|L1|A|299

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L4

rpS4_eS4

Chain L8

rpS8_eS8