IL_5WLC_038

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

5WLC|1|L1|C|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_038 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.293

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5WLC|1|L1|U|318
5WLC|1|L1|U|319
5WLC|1|L1|U|320
5WLC|1|L1|C|321
5WLC|1|L1|G|322
5WLC|1|L1|A|323
*
5WLC|1|L1|U|345
5WLC|1|L1|G|346

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L8

rpS8_eS8

Chain LD

rpS11_uS17

Chain LV

Enp2

Chain SX

Unassigned peptides