IL_5WLC_039

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_039 not in the Motif Atlas

Homologous match to IL_4V88_405

Geometric discrepancy: 0.1361

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

5WLC|1|L1|G|389
5WLC|1|L1|G|390
5WLC|1|L1|A|391
*
5WLC|1|L1|U|406
5WLC|1|L1|A|407
5WLC|1|L1|C|408

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L6

rpS6_eS6

Chain L8

rpS8_eS8

Chain LV

Enp2