IL_5WLC_041

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

5WLC|1|L1|U|440

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_041 not in the Motif Atlas

Homologous match to IL_4V88_407

Geometric discrepancy: 0.2323

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5WLC|1|L1|U|439
5WLC|1|L1|U|440
5WLC|1|L1|A|441
*
5WLC|1|L1|U|463
5WLC|1|L1|A|464

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain NC

Lcp5

Chain SI

Bms1