IL_5WLC_049

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

5WLC|1|L1|U|959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_049 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.3169

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5WLC|1|L1|G|867
5WLC|1|L1|G|868
5WLC|1|L1|A|869
5WLC|1|L1|C|870
*
5WLC|1|L1|G|957
5WLC|1|L1|U|958
5WLC|1|L1|U|959
5WLC|1|L1|U|960
5WLC|1|L1|U|961

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain NF

rpS13_uS15