IL_5WLC_054

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_054 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.2711

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5WLC|1|L1|G|985
5WLC|1|L1|G|986
5WLC|1|L1|G|987
5WLC|1|L1|A|988
5WLC|1|L1|U|989
5WLC|1|L1|C|990
*
5WLC|1|L1|G|1014
5WLC|1|L1|U|1015
5WLC|1|L1|C|1016

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain NJ

Rrp5