IL_5WLC_058

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_058 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.2996

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5WLC|1|L1|C|1173
5WLC|1|L1|C|1174
5WLC|1|L1|U|1175
5WLC|1|L1|G|1176
*
5WLC|1|L1|C|1463
5WLC|1|L1|G|1464
5WLC|1|L1|C|1465
5WLC|1|L1|G|1466

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain SI

Bms1

Chain SM

Imp4

Chain ST

Nop14