IL_5WLC_071

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGU*AUUG

Length

7 nucleotides

Bulged bases

5WLC|1|L0|U|267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_071 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2302

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

5WLC|1|L0|C|245
5WLC|1|L0|G|246
5WLC|1|L0|U|247
*
5WLC|1|L0|A|265
5WLC|1|L0|U|266
5WLC|1|L0|U|267
5WLC|1|L0|G|268

Current chains

Chain L0

5' ETS

Nearby chains

Chain LC

rpS16_uS9

Chain LZ

Imp3

Chain SI

Bms1

Chain SY

Utp11