IL_5WLC_075

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_075 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2252

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5WLC|1|L0|G|505
5WLC|1|L0|G|506
5WLC|1|L0|U|507
5WLC|1|L0|C|508
*
5WLC|1|L0|G|528
5WLC|1|L0|A|529
5WLC|1|L0|A|530
5WLC|1|L0|C|531

Current chains

Chain L0

5' ETS

Nearby chains

Chain LP

Utp6

Chain SA

Nop56

Chain SS

Utp14