IL_5WLC_078

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGCAAGUC*GCAGCCGCGGUAAUUCCAGC

Length

29 nucleotides

Bulged bases

5WLC|1|L1|A|556, 5WLC|1|L1|C|572, 5WLC|1|L1|C|573, 5WLC|1|L1|G|574, 5WLC|1|L1|C|575, 5WLC|1|L1|A|579, 5WLC|1|L1|A|585, 5WLC|1|L1|G|586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WLC|1|L1|G|551
5WLC|1|L1|G|552
5WLC|1|L1|G|553
5WLC|1|L1|C|554
5WLC|1|L1|A|555
5WLC|1|L1|A|556
5WLC|1|L1|G|557
5WLC|1|L1|U|558
5WLC|1|L1|C|559
*
5WLC|1|L1|G|568
5WLC|1|L1|C|569
5WLC|1|L1|A|570
5WLC|1|L1|G|571
5WLC|1|L1|C|572
5WLC|1|L1|C|573
5WLC|1|L1|G|574
5WLC|1|L1|C|575
5WLC|1|L1|G|576
5WLC|1|L1|G|577
5WLC|1|L1|U|578
5WLC|1|L1|A|579
5WLC|1|L1|A|580
5WLC|1|L1|U|581
5WLC|1|L1|U|582
5WLC|1|L1|C|583
5WLC|1|L1|C|584
5WLC|1|L1|A|585
5WLC|1|L1|G|586
5WLC|1|L1|C|587

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain NA

Mpp10

Chain NB

Sas10

Chain SI

Bms1

Chain SM

Imp4

Chain SR

rpS23_uS12

Chain ST

Nop14

Chain SY

Utp11