IL_5WLC_082

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

5WLC|1|L1|G|913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_082 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.3464

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5WLC|1|L1|U|893
5WLC|1|L1|U|894
5WLC|1|L1|G|895
5WLC|1|L1|U|896
5WLC|1|L1|C|897
5WLC|1|L1|A|898
5WLC|1|L1|G|899
*
5WLC|1|L1|C|910
5WLC|1|L1|U|911
5WLC|1|L1|U|912
5WLC|1|L1|G|913
5WLC|1|L1|G|914
5WLC|1|L1|A|915
5WLC|1|L1|U|916
5WLC|1|L1|U|917
5WLC|1|L1|U|918
5WLC|1|L1|A|919

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain LR

Utp13

Chain NG

rpS14_uS11