IL_5WLC_083

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UUGUACACACCGCC

Length

16 nucleotides

Bulged bases

5WLC|1|L1|U|1628, 5WLC|1|L1|U|1630, 5WLC|1|L1|A|1631, 5WLC|1|L1|C|1632, 5WLC|1|L1|C|1639

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WLC|1|L1|G|1150
5WLC|1|L1|A|1151
*
5WLC|1|L1|U|1627
5WLC|1|L1|U|1628
5WLC|1|L1|G|1629
5WLC|1|L1|U|1630
5WLC|1|L1|A|1631
5WLC|1|L1|C|1632
5WLC|1|L1|A|1633
5WLC|1|L1|C|1634
5WLC|1|L1|A|1635
5WLC|1|L1|C|1636
5WLC|1|L1|C|1637
5WLC|1|L1|G|1638
5WLC|1|L1|C|1639
5WLC|1|L1|C|1640

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain LO

Utp1

Chain LQ

Utp12

Chain LR

Utp13

Chain NA

Mpp10

Chain ST

Nop14