IL_5WLC_088

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AACU*ACU

Length

7 nucleotides

Bulged bases

5WLC|1|L0|C|469

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_088 not in the Motif Atlas

Geometric match to IL_6CZR_118

Geometric discrepancy: 0.3815

The information below is about IL_6CZR_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

5WLC|1|L0|A|467
5WLC|1|L0|A|468
5WLC|1|L0|C|469
5WLC|1|L0|U|470
*
5WLC|1|L2|A|48
5WLC|1|L2|C|49
5WLC|1|L2|U|50

Current chains

Chain L0

5' ETS

Chain L2

U3 snoRNA

Nearby chains

Chain LM

Utp10

Chain LW

Utp7

Chain SL

Utp24