IL_5WLC_089

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_089 not in the Motif Atlas

Homologous match to IL_8P9A_397

Geometric discrepancy: 0.259

The information below is about IL_8P9A_397

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

5WLC|1|L1|C|443
5WLC|1|L1|C|444
5WLC|1|L1|A|445
5WLC|1|L1|A|446
5WLC|1|L1|U|447
*
5WLC|1|L1|A|460
5WLC|1|L1|G|461

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L4

rpS4_eS4

Chain LF

rpS24_eS24

Chain NC

Lcp5