IL_5WNP_036

3D structure

PDB id

5WNP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases (A, C, G, U)

926G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WNP_036 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.0746

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

42

Unit IDs

5WNP|1|A|G|925
5WNP|1|A|G|926
5WNP|1|A|G|927
*
5WNP|1|A|U|1390
5WNP|1|A|U|1391

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains