IL_5WNP_057
3D structure
- PDB id
- 5WNP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GU(5MC)AC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WNP_057 not in the Motif Atlas
- Homologous match to IL_4LFB_058
- Geometric discrepancy: 0.1807
- The information below is about IL_4LFB_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5WNP|1|A|G|1405
5WNP|1|A|U|1406
5WNP|1|A|5MC|1407
5WNP|1|A|A|1408
5WNP|1|A|C|1409
*
5WNP|1|A|G|1491
5WNP|1|A|A|1492
5WNP|1|A|A|1493
5WNP|1|A|G|1494
5WNP|1|A|U|1495
5WNP|1|A|C|1496
Current chains
- Chain A
- 16S Ribosomal RNA rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain a
- RNA (5'-R(*AP*AP*AP*UP*UP*U)-3')
- Chain b
- RNA (5'-R(P*UP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*(PSU)P*CP*UP*A)-3')
Coloring options: