IL_5WNP_067

3D structure

PDB id

5WNP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WNP_067 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.0838

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

5WNP|1|A|G|1401
5WNP|1|A|4OC|1402
5WNP|1|A|C|1403
5WNP|1|A|5MC|1404
*
5WNP|1|A|G|1497
5WNP|1|A|UR3|1498
5WNP|1|A|A|1499
5WNP|1|A|A|1500
5WNP|1|A|C|1501

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain a

RNA (5'-R(*AP*AP*AP*UP*UP*U)-3')