IL_5WNR_048

3D structure

PDB id

5WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

5WNR|1|A|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WNR_048 not in the Motif Atlas

Geometric match to IL_4LFB_048

Geometric discrepancy: 0.2701

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85222.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

5WNR|1|A|G|1124
5WNR|1|A|U|1125
5WNR|1|A|U|1126
5WNR|1|A|G|1127
5WNR|1|A|C|1128
*
5WNR|1|A|G|1143
5WNR|1|A|G|1144
5WNR|1|A|C|1145
5WNR|1|A|A|1146
5WNR|1|A|C|1147
5WNR|1|A|U|1148
5WNR|1|A|C|1149

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10