IL_5WNR_060

3D structure

PDB id

5WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WNR_060 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.0615

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5WNR|1|A|C|1431
5WNR|1|A|G|1432
5WNR|1|A|A|1433
5WNR|1|A|A|1434
5WNR|1|A|G|1435
*
5WNR|1|A|C|1466
5WNR|1|A|G|1467
5WNR|1|A|A|1468
5WNR|1|A|G|1469

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain T

30S ribosomal protein S20