IL_5WNR_066

3D structure

PDB id

5WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WNR_066 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.1167

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5WNR|1|A|C|1259
5WNR|1|A|C|1260
5WNR|1|A|A|1261
5WNR|1|A|C|1262
*
5WNR|1|A|G|1273
5WNR|1|A|G|1274
5WNR|1|A|A|1275
5WNR|1|A|G|1276

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain U

30S ribosomal protein Thx