IL_5WNS_069

3D structure

PDB id

5WNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

(5MC)ACGC*GCGAAG

Length

11 nucleotides

Bulged bases

5WNS|1|A|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WNS_069 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.5525

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5WNS|1|A|5MC|1407
5WNS|1|A|A|1408
5WNS|1|A|C|1409
5WNS|1|A|G|1410
5WNS|1|A|C|1411
*
5WNS|1|A|G|1489
5WNS|1|A|C|1490
5WNS|1|A|G|1491
5WNS|1|A|A|1492
5WNS|1|A|A|1493
5WNS|1|A|G|1494

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain L

30S ribosomal protein S12