IL_5WNS_071

3D structure

PDB id

5WNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

5WNS|1|A|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WNS_071 not in the Motif Atlas

Homologous match to IL_8B0X_178

Geometric discrepancy: 0.589

The information below is about IL_8B0X_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.5

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

13

Unit IDs

5WNS|1|A|5MC|1407
5WNS|1|A|A|1408
5WNS|1|A|C|1409
*
5WNS|1|A|G|1491
5WNS|1|A|A|1492
5WNS|1|A|A|1493
5WNS|1|A|G|1494

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain L

30S ribosomal protein S12