IL_5WNU_056

3D structure

PDB id

5WNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

G(4OC)C(5MC)G*CG(UR3)AAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WNU_056 not in the Motif Atlas

Homologous match to IL_4LFB_057

Geometric discrepancy: 0.0698

The information below is about IL_4LFB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WNU|1|A|G|1401
5WNU|1|A|4OC|1402
5WNU|1|A|C|1403
5WNU|1|A|5MC|1404
5WNU|1|A|G|1405
*
5WNU|1|A|C|1496
5WNU|1|A|G|1497
5WNU|1|A|UR3|1498
5WNU|1|A|A|1499
5WNU|1|A|A|1500
5WNU|1|A|C|1501

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain a

RNA (5'-R(*AP*(A2M)P*A)-3')