IL_5WNV_021
3D structure
- PDB id
- 5WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5WNV|1|A|A|532, 5WNV|1|A|U|534
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WNV_021 not in the Motif Atlas
- Homologous match to IL_5J7L_025
- Geometric discrepancy: 0.1005
- The information below is about IL_5J7L_025
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5WNV|1|A|G|515
5WNV|1|A|PSU|516
5WNV|1|A|G|517
5WNV|1|A|C|518
5WNV|1|A|C|519
5WNV|1|A|A|520
5WNV|1|A|G|521
*
5WNV|1|A|C|528
5WNV|1|A|G|529
5WNV|1|A|G|530
5WNV|1|A|U|531
5WNV|1|A|A|532
5WNV|1|A|A|533
5WNV|1|A|U|534
5WNV|1|A|A|535
5WNV|1|A|C|536
Current chains
- Chain A
- 16S Ribosomal RNA rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
- Chain a
- RNA (5'-R(P*UP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*(PSU)P*CP*UP*A)-3')
- Chain b
- RNA (5'-R(P*UP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*(PSU)P*CP*UP*A)-3')
Coloring options: